![]() ![]() A colored number corresponding to the type you are counting will be displayed on the image every time you click, and the corresponding counter is updated.Īdd the following macros to ImageJ/macros/StartupMacros.txt, restart ImageJ, and you will be able to change the counter type by pressing “1”, “2”, “3”, etc. Select the type you want to count, and count by clicking on the feature in the image. Note that at any time you can add types or remove them. ![]() Click initialize, now you are ready to count features. Open the Cell Counter plugin and the image/stack you want to count (if the Cell Counter plugin is already open you don’t need to open a new instance). To speed up the counting process and minimize those issues related to the subjective decisions of the scoring personnel, we developed a semi-automated, image-based cell colony counting setup, named CoCoNut (Colony Counter developed by the Nutech department at the Technical University of Denmark).
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